PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_012570135.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family M-type_MADS
Protein Properties Length: 231aa    MW: 26117.8 Da    PI: 9.7909
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_012570135.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.24.4e-231664149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+ +n+sn qvtfskRr g++KKA+EL++LC+aev +i+fs+  k++ +
  XP_012570135.1 16 KKMSNESNLQVTFSKRRSGLFKKASELCTLCGAEVVLIVFSPGEKVFSF 64
                    5689***************************************999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006624.558868IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-33867IPR002100Transcription factor, MADS-box
CDDcd002659.45E-36978No hitNo description
SuperFamilySSF554551.96E-28984IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-191030IPR002100Transcription factor, MADS-box
PfamPF003195.0E-241864IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-193045IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-194566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MSTGRKSRGR QKIEMKKMSN ESNLQVTFSK RRSGLFKKAS ELCTLCGAEV VLIVFSPGEK  60
VFSFGHSNVD TIIDRYLTRV PLQHIGTMQF IEAHRNANVC GLNETLTQAN NQLDAEKRHG  120
DELSHLRKTT EAQFWWACPI DVMSRAQLEL FKKALEELKK LVAQHADRIM IQGAPPQTLQ  180
FFVGNASTSN NAIHPHQQQQ IQMYPPQFFQ NPIMQPHWSG FNNTGGGYGS T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A2e-15976168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B2e-15976168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C2e-15976168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_D2e-15976168MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3kov_A2e-15976168Myocyte-specific enhancer factor 2A
3kov_B2e-15976168Myocyte-specific enhancer factor 2A
3kov_I2e-15976168Myocyte-specific enhancer factor 2A
3kov_J2e-15976168Myocyte-specific enhancer factor 2A
3mu6_A2e-15976168Myocyte-specific enhancer factor 2A
3mu6_B2e-15976168Myocyte-specific enhancer factor 2A
3mu6_C2e-15976168Myocyte-specific enhancer factor 2A
3mu6_D2e-15976168Myocyte-specific enhancer factor 2A
3p57_A2e-15976168Myocyte-specific enhancer factor 2A
3p57_B2e-15976168Myocyte-specific enhancer factor 2A
3p57_C2e-15976168Myocyte-specific enhancer factor 2A
3p57_D2e-15976168Myocyte-specific enhancer factor 2A
3p57_I2e-15976168Myocyte-specific enhancer factor 2A
3p57_J2e-15976168Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012570135.11e-176PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK25e-64AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLG7L6X51e-121G7L6X5_MEDTR; MADS-box transcription factor family protein
STRINGGLYMA20G27330.13e-87(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-57AGAMOUS-like 62